{"id":78740,"date":"2023-05-24T09:00:20","date_gmt":"2023-05-24T08:00:20","guid":{"rendered":"https:\/\/blogs.tees.ac.uk\/environment\/?p=78740"},"modified":"2024-12-05T16:56:30","modified_gmt":"2024-12-05T16:56:30","slug":"new-paper-alert-from-dr-desire-dalton","status":"publish","type":"post","link":"https:\/\/blogs.tees.ac.uk\/environment\/2023\/05\/24\/new-paper-alert-from-dr-desire-dalton\/","title":{"rendered":"New paper alert from Dr Desire Dalton"},"content":{"rendered":"<p><strong>New Publication:<\/strong> PAReTT: a Python package for the Automated Retrieval and management of divergence time data from the TimeTree resource for downstream analyses<\/p>\n<p>Louis-St\u00e9phane IV Le Clercq a PhD student of Dr Desir\u00e9 Lee Dalton (Lecturer in Forensic Science, Teesside University) has developed PAReTT \u2013 a Python Automated Retrieval of TimeTree data. In order to study speciation (emergence of a new species, sub-species, or ecotypes) accurate fossil-calibrated, estimates of divergence times are needed. PAReTT is a biologist-friendly, easily accessible, and freely available algorithm that can be used to retrieve (1) divergence times, between an individual pair or between all species in a list, (2) evolutionary timelines, for individuals or a list species, and (3) time trees of the divergence times, either for all available species within a specified taxon or between individual species supplied as a list. Future updates will include the ability to switch between scientific names and common names for species as well as the ability to calculate diversification rates for a table of multiple lineages.<\/p>\n<p>Access the publication through the publishers website with this link (DOI: 10.1007\/s00239-023-10106-3)<\/p>\n<p>https:\/\/link.springer.com\/article\/10.1007\/s00239-023-10106-3<\/p>\n<p>&nbsp;<\/p>\n","protected":false},"excerpt":{"rendered":"<p>New Publication: PAReTT: a Python package for the Automated Retrieval and management of divergence time data from the TimeTree resource for downstream analyses Louis-St\u00e9phane IV Le Clercq a PhD student of Dr Desir\u00e9 Lee Dalton&hellip; <a href=\"https:\/\/blogs.tees.ac.uk\/environment\/2023\/05\/24\/new-paper-alert-from-dr-desire-dalton\/\">More<\/a><\/p>\n","protected":false},"author":23320,"featured_media":78741,"comment_status":"closed","ping_status":"open","sticky":false,"template":"","format":"standard","meta":{"_jetpack_newsletter_access":"","_jetpack_dont_email_post_to_subs":false,"_jetpack_newsletter_tier_id":0,"_jetpack_memberships_contains_paywalled_content":false,"footnotes":"","_jetpack_memberships_contains_paid_content":false},"categories":[18,1],"tags":[],"jetpack_featured_media_url":"https:\/\/blogs.tees.ac.uk\/environment\/files\/2023\/05\/Parett-image.png","jetpack-related-posts":[],"jetpack_sharing_enabled":true,"jetpack_likes_enabled":true,"_links":{"self":[{"href":"https:\/\/blogs.tees.ac.uk\/environment\/wp-json\/wp\/v2\/posts\/78740"}],"collection":[{"href":"https:\/\/blogs.tees.ac.uk\/environment\/wp-json\/wp\/v2\/posts"}],"about":[{"href":"https:\/\/blogs.tees.ac.uk\/environment\/wp-json\/wp\/v2\/types\/post"}],"author":[{"embeddable":true,"href":"https:\/\/blogs.tees.ac.uk\/environment\/wp-json\/wp\/v2\/users\/23320"}],"replies":[{"embeddable":true,"href":"https:\/\/blogs.tees.ac.uk\/environment\/wp-json\/wp\/v2\/comments?post=78740"}],"version-history":[{"count":1,"href":"https:\/\/blogs.tees.ac.uk\/environment\/wp-json\/wp\/v2\/posts\/78740\/revisions"}],"predecessor-version":[{"id":78744,"href":"https:\/\/blogs.tees.ac.uk\/environment\/wp-json\/wp\/v2\/posts\/78740\/revisions\/78744"}],"wp:featuredmedia":[{"embeddable":true,"href":"https:\/\/blogs.tees.ac.uk\/environment\/wp-json\/wp\/v2\/media\/78741"}],"wp:attachment":[{"href":"https:\/\/blogs.tees.ac.uk\/environment\/wp-json\/wp\/v2\/media?parent=78740"}],"wp:term":[{"taxonomy":"category","embeddable":true,"href":"https:\/\/blogs.tees.ac.uk\/environment\/wp-json\/wp\/v2\/categories?post=78740"},{"taxonomy":"post_tag","embeddable":true,"href":"https:\/\/blogs.tees.ac.uk\/environment\/wp-json\/wp\/v2\/tags?post=78740"}],"curies":[{"name":"wp","href":"https:\/\/api.w.org\/{rel}","templated":true}]}}